Wayne Enterprises is a multinational company founded by the Wayne family. The main building known as Wayne Tower was destroyed by CEO Bruce Wayne using a modified reactor created by Jeremiah Valeska as a way of attempting to stall the oncoming march of the US Military which was attempting to enact Protocol 386.
Ten years later, Wayne Tower was rebuilt and celebrated a grand re-opening which was attended by many. The event was disrupted by an attempt crafted by Jeremiah Valeska to destroy the building using C4.
The original Wayne Enterprise headquarters before its destruction.
At some point the Court of Owls took control of Wayne Enterprises, running it above the board of directors themselves.
Ten years before the death of Thomas and Martha Wayne, Thomas founded a bioengineering program in order to help people who have been born disfigured. However, Wayne's trust in the facility's director Hugo Strange had been misplaced and Strange used his position to conduct unethical and barbaric experiments on the inmates. Once Thomas Wayne found out, he closed the facility.
However, Strange eventually founded another facility called Indian Hill. When Thomas Wayne began researching rumors about the facility, Strange hired a hitman to murder Wayne in order to hide his involvement.
Bruce looking into illegal activities[]
Sid Bunderslaw later mentioned to Bruce Wayne that Thomas Wayne and his father had kept quiet about the illegal activities at Wayne Enterprise. Wayne Enterprises is revealed to be the owners of Pinewood Farms which is a bio-engineering farm that did different bio-engineering experiments. This is where Karen Jennings was brought to in order to change her crippling arm. The result was that Karen gained a reptilian arm.[1]